PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027338390.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family M-type_MADS
Protein Properties Length: 355aa    MW: 40767.4 Da    PI: 5.4434
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027338390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391e-12954146
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    kri  ++ r+ tf +R +g++KK  E S++C+ae++ i++  +g++
  XP_027338390.1  9 KRIPKERTRKLTFKQRSKGLMKKIAEFSTMCGAEACFIVYDGNGNV 54
                    6899999*********************************999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MGRARITLKR IPKERTRKLT FKQRSKGLMK KIAEFSTMCG AEACFIVYDG NGNVEPMTWP  60
EDSRVVHSII EKYENQKNER PPKTFNIEDF FENRKNMVEA EISRVQKEIS KIKYPTWDKS  120
YSKLGEEQLK AFIAMLDAKI GACDHRINMF KNMHQSEANF NFIQNMVHEG ATSSHASQLN  180
FMQNVSQSQR IPIPLSQIND NNGMANFTNS TNQVDEAYFH RTNMLANLQQ GDAYFNFMPN  240
MAQVSGAPSH GSQLNFMQNI SETQHNFESL RPQDDNNGMV NFTNPVDMPQ DSTNQLGESN  300
TNFANHLGEF ERWVDEPTEI EEWINQLGGD LVDTVSQLDE SVLQNTRVQS QNDRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-23M-type_MADS family protein