PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027337775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 23067.3 Da PI: 8.0825 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 15 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+vg++++lqqq+++l+ael XP_027337775.1 15 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAEL 109 7***********************9989******************************************************************* PP DUF260 95 allkee 100 +++++ XP_027337775.1 110 TYVQAR 115 *99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MDCGGKIGGG ERSGPCGACK FLRRKCVKGC IFAPYFDSDQ GTAHFAAVHK VFGASNASKL 60 LMRIPVHKRL DAVVTLCYEA LARARDPVYG CVGHLFALQQ QVMNLQAELT YVQARLATMQ 120 RLPVTVAPLT LPQSSSPTSL HSSSDHLPSS ADMQSVSMHF DSLQQHSTSL ELSSFFNPSE 180 QQLEDGELQA LAREFVSRYL PGVRFQPSNP H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 10 | GGKIGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-74 | LBD family protein |