PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027336940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 24712.9 Da PI: 8.015 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.2 | 1.8e-40 | 27 | 127 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael XP_027336940.1 27 PCGACKFLRRKCVPGCIFAPYFDSEQgATHFAAVHKVFGASNVSKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAEL 121 7***********************9989******************************************************************* PP DUF260 95 allkee 100 ++l+ + XP_027336940.1 122 SYLQGH 127 *99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MSINSSCSGS GGGSSSGGGS NSGGGSPCGA CKFLRRKCVP GCIFAPYFDS EQGATHFAAV 60 HKVFGASNVS KLLLNIPVHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVSLQAE 120 LSYLQGHLAT LELPQPPPPS SPQATIAPPV ISIADLPSAP ASTVPATYDL SSLFDPMAQN 180 SSWAMQQRPI DPRQYLGSGP SASSGSGGDL QALARELLHR HGSAPVACSN PSSSHSLSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 2e-84 | LBD family protein |