PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027333787.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 200aa MW: 23898.8 Da PI: 11.2875 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.4 | 2.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+eyss XP_027333787.1 9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 77.6 | 3.1e-26 | 76 | 145 | 2 | 71 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 ++++ + ++a +e++ e+akLk+++e Lqr+qR+++Ge+L+sLs+keLq+LeqqL++++k+iRs+K+ XP_027333787.1 76 AERQLVGDDQAPNENWVIEHAKLKARMEVLQRNQRNFKGEELDSLSIKELQNLEQQLDSAIKRIRSRKSF 145 5666677778889*******************************************************75 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLFEYSSD 60 PCMERVIERY ERYSYAERQL VGDDQAPNEN WVIEHAKLKA RMEVLQRNQR NFKGEELDSL 120 SIKELQNLEQ QLDSAIKRIR SRKSFWVFTC RTKSCMNLFQ SFRKRIRHCR NITICSPRRL 180 RKKRRRWPNR SKGGFIITRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 185 | RKRIRHCRNITICSPRRLRKKRR |
2 | 178 | 186 | RRLRKKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-82 | MIKC_MADS family protein |