PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027332022.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 424aa MW: 46241.9 Da PI: 7.7793

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027332022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.5	3.1e-10	54	79	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ XP_027332022.1 54 PGEPDCLYYLRTGMCGYGSNCRYNHP 79 5789*********************8 PP
2	zf-CCCH	37.5	3.9e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_027332022.1 98 QPDCEYFLKTGTCKYGSTCKYHHPK 122 789********************96 PP
3	zf-CCCH	38.1	2.6e-12	145	167	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ XP_027332022.1 145 SCPYYMRTGSCKFGVACKFHHPQ 167 6********************97 PP
4	zf-CCCH	40.1	6.3e-13	278	303	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ CkF+H++ XP_027332022.1 278 DQPECRYFMSTGTCKYGSDCKFHHPK 303 689*********************96 PP
5	zf-CCCH	34.8	2.8e-11	320	345	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++CkF H+ XP_027332022.1 320 PGQAICSYYRINGICKFGPTCKFDHP 345 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MPENRQVLRN ADSTPSGDNI EGVADFSEAI RRLKINDNRD RDAAAQSTQY PDRPGEPDCL 60 YYLRTGMCGY GSNCRYNHPA HVSLGTHYGE ELPQRVGQPD CEYFLKTGTC KYGSTCKYHH 120 PKDRRGAAPV LFNTLGLPMR QEEKSCPYYM RTGSCKFGVA CKFHHPQHAS FGAYPLAGSP 180 ASTIIPTSGL PYVGGFPAWS VSRMSYLSGQ GLQSYVPPFL SSSQGMIPAP SWTNYMGSMN 240 AAIPTGFLGS NLVYDYMNPS ESLSGGQVLN SALPDRPDQP ECRYFMSTGT CKYGSDCKFH 300 HPKERIAQSL INPLGLPVRP GQAICSYYRI NGICKFGPTC KFDHPVLAIP QNYGLTSPTL 360 TVIDASLISN PRGLSTVQPS ETSPSKVSSD KLQHSDTKAA AEDSSKQVDT TSNSLPPSSE 420 SLHD

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MPENRQVLRN ADSTPSGDNI EGVADFSEAI RRLKINDNRD RDAAAQSTQY PDRPGEPDCL  60
YYLRTGMCGY GSNCRYNHPA HVSLGTHYGE ELPQRVGQPD CEYFLKTGTC KYGSTCKYHH  120
PKDRRGAAPV LFNTLGLPMR QEEKSCPYYM RTGSCKFGVA CKFHHPQHAS FGAYPLAGSP  180
ASTIIPTSGL PYVGGFPAWS VSRMSYLSGQ GLQSYVPPFL SSSQGMIPAP SWTNYMGSMN  240
AAIPTGFLGS NLVYDYMNPS ESLSGGQVLN SALPDRPDQP ECRYFMSTGT CKYGSDCKFH  300
HPKERIAQSL INPLGLPVRP GQAICSYYRI NGICKFGPTC KFDHPVLAIP QNYGLTSPTL  360
TVIDASLISN PRGLSTVQPS ETSPSKVSSD KLQHSDTKAA AEDSSKQVDT TSNSLPPSSE  420
SLHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-118	C3H family protein