PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027331418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 371aa MW: 41978.8 Da PI: 7.6012 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.2 | 1.9e-22 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e+ snr+vt+skR+ gilKKA+ELS+LCd+++ +++fs+tgk XP_027331418.1 10 KLESISNRHVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGK 53 57899**************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence |
MGRVKLKIKK LESISNRHVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKATLLQGE 60 RSNIEEIIAK FSQHSPQERA KRKMESLEAL KKTFKKLDHD VKLQDFLGSS SQTVEELTYQ 120 LRILQAQLTE VHQRLSYWNN LEKINSIEHL KQMEDSLRES INRVCLQKEN LGKHQLISLE 180 CANQLQEGMT LPLMMAGLQE SQPLSWLLNS DNRQLMLPSE PKYLPFSDNT NRDVECSTDI 240 SLPGYSGYIG SNKLEVGSSP QVTSLGQGGA ALNELNGTAY LNVQHCDQFA YPPPPDIEEV 300 KHQPTTMNSK PNTVEYQVNS NFDLPRSLFE NGHQFWNSAS GSCGIAMYNE NGYHRVSGLF 360 MFHKIILYSP G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 6e-97 | M-type_MADS family protein |