PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027331300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 371aa MW: 40189.2 Da PI: 6.4982 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.3 | 1.2e-06 | 20 | 60 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ + lfC+ ++ +lC C +++H H+ XP_027331300.1 20 KPCDSCKLASAALFCRPDSAFLCIACDSKIHCAnklasrHE 60 68******99********************95545666665 PP | |||||||
2 | zf-B_box | 27.9 | 5e-09 | 62 | 107 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C + +H+ H++vp+ XP_027331300.1 62 VWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSAnplarrHERVPV 107 689*****************************66899999*99986 PP | |||||||
3 | CCT | 69.7 | 7.4e-24 | 297 | 340 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_027331300.1 297 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 340 9*****************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence |
MGIERGGLKG FRTGWTVPPK PCDSCKLASA ALFCRPDSAF LCIACDSKIH CANKLASRHE 60 RVWMCEVCEQ APAAVTCKAD AAALCVTCDS DIHSANPLAR RHERVPVEPF LDSADSIVKA 120 SVAASFGFIV PSDDAVASDG FAHDDADAAA WLIPNPDFGS KLMDAPDIKS KELFFAEMDP 180 FLDFDYSNSF QNNHNHNSAG NDSVVPVQTK PAPALAPLIN HQSESCFDID FCRSKLSSFN 240 YPSQSLSQSV SSSSLDVGVV PDGNTVSEIS YSMGRNGSDV SGGSSGQGAT QLCGMDREAR 300 VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EIDSDVERLY SPAAAAAALM 360 LDTPYGVVPS F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-104 | CO-like family protein |