PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027329405.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 675aa MW: 74150.6 Da PI: 7.0003

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027329405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	294	314	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg XP_027329405.1 294 PCPEFRK-GTCQKGDSCEYAHG 314 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence
MFKIDRLIEF ILSYSAGFVG MCSGSKSKLS FSNPVMENNY QKQNQDGLYN FSILLELSAS 60 DDFEAFKREV NEKGLDVNEA GFWYGRRIGS KKMGSETRTP LMIASLFGST KVLKHILEGG 120 SVDVNRVCGS DRATALHCAV AGGSESSLEI VKLLLDAGAD AELIDASGNK PVNLIAPAFD 180 SLSKSRRKAM ELFLRGGERD ELMEQEMFSV VFSSKEGTEK KEKEGNDKKE YPVDISLPDI 240 NNGIYGTDEF RMYSFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK 300 GTCQKGDSCE YAHGVFESWL HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPVYASTGSA 360 MPSPKSYSSS ALDMTAMSPL ALSSTSLPMP TVSTPPMSPL AASSSPKSGS LWQNKINLTP 420 PSLQLPGSRL KTTLSARDLD LEMELSFRSK EFSRIGDLNP TNLDDLLASA DPSVLTQLHG 480 LSTPTQLQSP SGLQMRQNMN HLRASYPSNI PSSPVRKPSA YGFDSSAAVA AAVMNSRSAA 540 FAKRSQSFID RGAATHHLGL SSAPNNPSCR VSSALSDWSS PTGKLDWGVN GDELHKLRKS 600 ASFGFRNNGV TATASPIAQQ EHAEPDVSWV HSLVKDVPSE SSDIFGAEKQ QYDLSKEMLP 660 PWVEQVYIEQ EQMVA

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence

MFKIDRLIEF ILSYSAGFVG MCSGSKSKLS FSNPVMENNY QKQNQDGLYN FSILLELSAS  60
DDFEAFKREV NEKGLDVNEA GFWYGRRIGS KKMGSETRTP LMIASLFGST KVLKHILEGG  120
SVDVNRVCGS DRATALHCAV AGGSESSLEI VKLLLDAGAD AELIDASGNK PVNLIAPAFD  180
SLSKSRRKAM ELFLRGGERD ELMEQEMFSV VFSSKEGTEK KEKEGNDKKE YPVDISLPDI  240
NNGIYGTDEF RMYSFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK  300
GTCQKGDSCE YAHGVFESWL HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPVYASTGSA  360
MPSPKSYSSS ALDMTAMSPL ALSSTSLPMP TVSTPPMSPL AASSSPKSGS LWQNKINLTP  420
PSLQLPGSRL KTTLSARDLD LEMELSFRSK EFSRIGDLNP TNLDDLLASA DPSVLTQLHG  480
LSTPTQLQSP SGLQMRQNMN HLRASYPSNI PSSPVRKPSA YGFDSSAAVA AAVMNSRSAA  540
FAKRSQSFID RGAATHHLGL SSAPNNPSCR VSSALSDWSS PTGKLDWGVN GDELHKLRKS  600
ASFGFRNNGV TATASPIAQQ EHAEPDVSWV HSLVKDVPSE SSDIFGAEKQ QYDLSKEMLP  660
PWVEQVYIEQ EQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein