PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027329404.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 683aa MW: 75082.4 Da PI: 6.866

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027329404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.4e-08	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg XP_027329404.1 274 PCPEFRK-GTCQKGDSCEYAHG 294 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MCSGSKSKLS FSNPVMENNY QKQNQDGLYN FSILLELSAS DDFEAFKREV NEKGLDVNEA 60 GFWYGRRIGS KKMGSETRTP LMIASLFGST KVLKHILEGG SVDVNRVCGS DRATALHCAV 120 AGGSESSLEI VKLLLDAGAD AELIDASGNK PVNLIAPAFD SLSKSRRKAM ELFLRGGERD 180 ELMEQEMFSV VFSSKEGTEK KEKEGNDKKE YPVDISLPDI NNGIYGTDEF RMYSFKVKPC 240 SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GTCQKGDSCE YAHGVFESWL 300 HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPVYASTGSA MPSPKSYSSS ALDMTAMSPL 360 ALSSTSLPMP TVSTPPMSPL AASSSPKSGS LWQNKINLTP PSLQLPGSRL KTTLSARDLD 420 LEMELLGLES PARQQQQQQQ QQFIEEIARI SSPSFRSKEF SRIGDLNPTN LDDLLASADP 480 SVLTQLHGLS TPTQLQSPSG LQMRQNMNHL RASYPSNIPS SPVRKPSAYG FDSSAAVAAA 540 VMNSRSAAFA KRSQSFIDRG AATHHLGLSS APNNPSCRVS SALSDWSSPT GKLDWGVNGD 600 ELHKLRKSAS FGFRNNGVTA TASPIAQQEH AEPDVSWVHS LVKDVPSESS DIFGAEKQQY 660 DLSKEMLPPW VEQVYIEQEQ MVA

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MCSGSKSKLS FSNPVMENNY QKQNQDGLYN FSILLELSAS DDFEAFKREV NEKGLDVNEA  60
GFWYGRRIGS KKMGSETRTP LMIASLFGST KVLKHILEGG SVDVNRVCGS DRATALHCAV  120
AGGSESSLEI VKLLLDAGAD AELIDASGNK PVNLIAPAFD SLSKSRRKAM ELFLRGGERD  180
ELMEQEMFSV VFSSKEGTEK KEKEGNDKKE YPVDISLPDI NNGIYGTDEF RMYSFKVKPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GTCQKGDSCE YAHGVFESWL  300
HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPVYASTGSA MPSPKSYSSS ALDMTAMSPL  360
ALSSTSLPMP TVSTPPMSPL AASSSPKSGS LWQNKINLTP PSLQLPGSRL KTTLSARDLD  420
LEMELLGLES PARQQQQQQQ QQFIEEIARI SSPSFRSKEF SRIGDLNPTN LDDLLASADP  480
SVLTQLHGLS TPTQLQSPSG LQMRQNMNHL RASYPSNIPS SPVRKPSAYG FDSSAAVAAA  540
VMNSRSAAFA KRSQSFIDRG AATHHLGLSS APNNPSCRVS SALSDWSSPT GKLDWGVNGD  600
ELHKLRKSAS FGFRNNGVTA TASPIAQQEH AEPDVSWVHS LVKDVPSESS DIFGAEKQQY  660
DLSKEMLPPW VEQVYIEQEQ MVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein