PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027329361.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

NF-YC

Protein Properties

Length: 263aa MW: 29646.8 Da PI: 4.5592

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027329361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	39.4	1.3e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + +t++ ++++v+ ++fdfl div + XP_027329361.1 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCVQTFNVFDFLKDIVSK 69 899***************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLRR GAKTVNAFHL KQCVQTFNVF 60 DFLKDIVSKV PDLGGSVATG DDHAVTKRRK VAEDDDNDSD EEPKRNRMPE HGHNGGSGRG 120 RGRGRGRGRG RGSRTVDHEM ISHVKCEEDP DILKQNDRHT QSNESMENVL EPEEVKQNFP 180 VNKPAEVSVR NFDLNMDPDE NMDSIAVSTS VRTSSPAKSM SEEKHEEYLG WSLSDVEKMA 240 IDPMQLANLN RIDEDEEDYD EEM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	128	RGRGRGRGRG
2	119	129	RGRGRGRGRGR
3	121	130	RGRGRGRGRG
4	121	131	RGRGRGRGRGR
5	123	132	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-49	NF-YC family protein