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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_027329360.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 280aa MW: 31701.4 Da PI: 4.9136 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 60.2 | 4.5e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + +t++ ++++v+ ++fdfl div +
XP_027329360.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCVQTFNVFDFLKDIVSK 86
5789**************************************************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 280 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLRRGAK 60 TVNAFHLKQC VQTFNVFDFL KDIVSKVPDL GGSVATGDDH AVTKRRKVAE DDDNDSDEEP 120 KRNRMPEHGH NGGSGRGRGR GRGRGRGRGS RTVDHEMISH VKCEEDPDIL KQNDRHTQSN 180 ESMENVLEPE EVKQNFPVNK PAEVSVRNFD LNMDPDENMD SIAVSTSVRT SSPAKSMSEE 240 KHEEYLGWSL SDVEKMAIDP MQLANLNRID EDEEDYDEEM |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 145 | RGRGRGRGRG |
| 2 | 136 | 146 | RGRGRGRGRGR |
| 3 | 138 | 147 | RGRGRGRGRG |
| 4 | 138 | 148 | RGRGRGRGRGR |
| 5 | 140 | 149 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 4e-62 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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