PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_Unassigned.962

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

HB-other

Protein Properties

Length: 1061aa MW: 116962 Da PI: 9.0787

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_Unassigned.962	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.6	2.1e-08	49	105	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++ lF + + ++e +e+++ +g+t +qV+ +F N+R k +k evm.model.AsparagusV1_Unassigned.962 49 KRPRDLLNPKAVKYMQLLFSIKDTFGKKELREISALCGITVTQVRDYFSNQRSKVRK 105 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence
MRLVHSQKEL FHSQIDQLQR IVVAQCKLTG ANPLSQEMAA GALSIKIGKR PRDLLNPKAV 60 KYMQLLFSIK DTFGKKELRE ISALCGITVT QVRDYFSNQR SKVRKLVRLS HEKASECDEF 120 KSTVDECSVS PKQLVPASKD IPASTSDLSV VGDYTHPPVS GNSTYVCTRS PAFPENAISN 180 SSQLLGNPNN FTPICPQILR EFENFTTMCT QAPGYPGNVS TVPSQVPGYS GNVNTVPLQV 240 PGYSGNFTSL CEQVPGTLGN FTSVSAPVTR NSGNVNSVAT PVFGYPGIVT SVRTFVPGSL 300 LDVTPIQDAQ PAPVKTDPKP VEGGPSCSSL EEATPGVDSD DKMFVEDIFN LMRKEQTFSG 360 HVKLMEWVLK IDNPSVLSWF STKGGISILA TWLSDAALEE QTTVLLVLFK VLCHLPLQKA 420 QPAQMSAILQ TVNTLRFYRN SDISNRAKVL LSRWSKMFVR TQRNRNSLKN GQRKMNQKQR 480 PNGIVDDVSW ESKLDIPEDI LALAQSAEDS RETEPKKALK LLTDSSDGST RKHGLSVSAT 540 KNKERRKVQL VEPDNKAGRS GPATRAVPSN NSRPMSTDDI QKAKMRASFM QEKYGKSNSP 600 PATETTPPKT EDHKAPSENK TPQLPQLRKN EVKKPPVLAS KNSSHKSENI RNLTPQEQML 660 EKIKKNQIQW RMPPEVTLSS TWRVGAGENS KEVQGQTERN KRGKETFYQN PQQIPPNPKD 720 PWDVEMDFDD SLTPEIPIDQ VPDSDTMAVE DQPSTSAAPV TTGDVDPQTD AELLQVLLKN 780 PDVVLALTKG EGKNFSDEQL VALLDMVKQA GTGSAGLLNG HAARVPEPEP EPVSLPSPTP 840 PSDAARITAW RSEFPSHATT SFSQSQFVHS SPTIPTILPP TPSPVMPTAI NQAPAMVTVN 900 PHTNSLPTKQ PSSLYKQPSL YTHPYQQQSR APETMISSNH YPVNHPQLPI YSQPKTPAIY 960 PGNTGTNSNY YADPNPNNYN VNSHSIYPPR RNEYAARGGL GSWSPEDSPA VVRNSSHGRD 1020 YYPEFDRSRE WSRQRQWDSG HRNLYPGGGG RSWRDRDRGR *

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence

MRLVHSQKEL FHSQIDQLQR IVVAQCKLTG ANPLSQEMAA GALSIKIGKR PRDLLNPKAV  60
KYMQLLFSIK DTFGKKELRE ISALCGITVT QVRDYFSNQR SKVRKLVRLS HEKASECDEF  120
KSTVDECSVS PKQLVPASKD IPASTSDLSV VGDYTHPPVS GNSTYVCTRS PAFPENAISN  180
SSQLLGNPNN FTPICPQILR EFENFTTMCT QAPGYPGNVS TVPSQVPGYS GNVNTVPLQV  240
PGYSGNFTSL CEQVPGTLGN FTSVSAPVTR NSGNVNSVAT PVFGYPGIVT SVRTFVPGSL  300
LDVTPIQDAQ PAPVKTDPKP VEGGPSCSSL EEATPGVDSD DKMFVEDIFN LMRKEQTFSG  360
HVKLMEWVLK IDNPSVLSWF STKGGISILA TWLSDAALEE QTTVLLVLFK VLCHLPLQKA  420
QPAQMSAILQ TVNTLRFYRN SDISNRAKVL LSRWSKMFVR TQRNRNSLKN GQRKMNQKQR  480
PNGIVDDVSW ESKLDIPEDI LALAQSAEDS RETEPKKALK LLTDSSDGST RKHGLSVSAT  540
KNKERRKVQL VEPDNKAGRS GPATRAVPSN NSRPMSTDDI QKAKMRASFM QEKYGKSNSP  600
PATETTPPKT EDHKAPSENK TPQLPQLRKN EVKKPPVLAS KNSSHKSENI RNLTPQEQML  660
EKIKKNQIQW RMPPEVTLSS TWRVGAGENS KEVQGQTERN KRGKETFYQN PQQIPPNPKD  720
PWDVEMDFDD SLTPEIPIDQ VPDSDTMAVE DQPSTSAAPV TTGDVDPQTD AELLQVLLKN  780
PDVVLALTKG EGKNFSDEQL VALLDMVKQA GTGSAGLLNG HAARVPEPEP EPVSLPSPTP  840
PSDAARITAW RSEFPSHATT SFSQSQFVHS SPTIPTILPP TPSPVMPTAI NQAPAMVTVN  900
PHTNSLPTKQ PSSLYKQPSL YTHPYQQQSR APETMISSNH YPVNHPQLPI YSQPKTPAIY  960
PGNTGTNSNY YADPNPNNYN VNSHSIYPPR RNEYAARGGL GSWSPEDSPA VVRNSSHGRD  1020
YYPEFDRSRE WSRQRQWDSG HRNLYPGGGG RSWRDRDRGR *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	3e-78	HB-other family protein