PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_Unassigned.1070

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 302aa MW: 34193.8 Da PI: 5.3137

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_Unassigned.1070	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5e-12	124	170	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h ++Er+RR++i + +++L +++P k+ +Ka+iL+ +++YIk++ evm.model.AsparagusV1_Unassigned.1070 124 QEHVIAERKRREKISEHLFTLYKIIPGM-----KRRDKASILKDTIDYIKEM 170 5799*********************8.....79*************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MELSEADLFT DAEIEDHNFN DEWELSSLNQ DFSFTNIWDC FQETLSSESN NSCSPCFEAP 60 LTPANIEEPT EKFPEPDKNW SFSSTNMGIL SFGHPCSDER LKTVEAVIKV SNNAKVKRSA 120 TGNQEHVIAE RKRREKISEH LFTLYKIIPG MKRRDKASIL KDTIDYIKEM VQKLKTLEEQ 180 AAKETVKSIF VSSEKSQPFI SDDKSGDDPP SPDTHLNIEA KIAAKIVLIK IHCKNRRGML 240 LKALSEIEKF HLSVISSSSL PFSDQFLDIT VTAQVEEGFS MTVKDLLKKL NTGFRKFMSR 300 D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	135	ERKRRE
2	131	136	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-20	bHLH family protein