PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_Unassigned.1034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LSD | ||||||||
Protein Properties | Length: 109aa MW: 11477.2 Da PI: 9.0611 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.6 | 2.7e-15 | 23 | 47 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Crt+L+YP+GApsV+Ca+C+ V evm.model.AsparagusV1_Unassigned.1034 23 CAQCRTTLMYPYGAPSVKCAICHYV 47 **********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence |
MVVNGGHQRP CKEDGNQVAH VSCAQCRTTL MYPYGAPSVK CAICHYVTNV GMNMRMPIPV 60 NRPNGATTVP QSTSASNSQT VVVENPMSRD ASGKLVSNVV VGVTTDKK* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.8 | 9e-35 | LSD family protein |