PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_10.97 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 816aa MW: 89262.7 Da PI: 6.3446 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 8e-21 | 126 | 181 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e+lF+++++p+ ++r++L++ lgLt rqVk+WFqNrR+++k evm.model.AsparagusV1_10.97 126 RKRHHRHTARQIKEMEALFKECPHPDDKQRQRLSQDLGLTPRQVKFWFQNRRTQMK 181 5667899**********************************************998 PP | |||||||
2 | START | 128.5 | 7.9e-41 | 347 | 544 | 26 | 206 |
EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT...... CS START 26 esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg...... 88 e +n +e++++f ++ e r+sg+v m++++lv +ld + +W e + ka tl+ issg evm.model.AsparagusV1_10.97 347 EVLNVEEYRKSFHW--PvelkqesgeFRNEGTRDSGLVMMNSVTLVDVFLDAN-KWMELFSsivsKARTLQIISSGischgn 425 55555666666522..1234555555677889*********************.99999999999***************** PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 89 galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 g l+lm+aelq+lsplvp R+ f+Ry+ ++g+w+ivd +d + + ++ R +++pSg++i++++ng+ +v wve evm.model.AsparagusV1_10.97 426 GSLHLMYAELQVLSPLVPtREAHFLRYCHHnAEEGTWTIVDFPIDRLHNGF-DIPLPRYRRRPSGCIIQDMPNGYARVMWVE 506 ******************************9******************99.99**************************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h++ +++ +h+++ +lv+sg+a+ga +w++ lqrqce+ evm.model.AsparagusV1_10.97 507 HAEIEDKPVHNVFDQLVSSGVAFGATRWLSILQRQCEC 544 ************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence |
MSTARALEEG APSSASRSDG DDRHCLQDAD GILTSRREAR GRSRGHSASM SAVASADTTA 60 ARRAHATIDE KPEASSLYFP SFLVFSSKEE EVEMAATTGG SKEEETESCH ADGTCGGEVA 120 GEEGKRKRHH RHTARQIKEM EALFKECPHP DDKQRQRLSQ DLGLTPRQVK FWFQNRRTQM 180 KSQQDRAENV ILRGENESLR SENFRLRSMM RDVRCRSCGG PAVLGEMPCG GDRHLRLENA 240 QLKDELQHLS CIVDADPLLA LSPAPLLMLP SPDPDMSIYS RHLGELQMVP VHTITKNHPK 300 LGGPIIMDQD QGPAMELATT ASEHLKRLCS IGEPLWINNN NFGGIVEVLN VEEYRKSFHW 360 PVELKQESGE FRNEGTRDSG LVMMNSVTLV DVFLDANKWM ELFSSIVSKA RTLQIISSGI 420 SCHGNGSLHL MYAELQVLSP LVPTREAHFL RYCHHNAEEG TWTIVDFPID RLHNGFDIPL 480 PRYRRRPSGC IIQDMPNGYA RVMWVEHAEI EDKPVHNVFD QLVSSGVAFG ATRWLSILQR 540 QCECHASLMV RKIPDLGVIP SADARMNFMK LSQRMVKIFC SNISSASNQS WAALSESSDD 600 ITRVKTQKNI EPGQPTGVIL TAVSTAWLPF SHQQVFDLLA NEQRRSQLDV LSSGSSYHEV 660 AHIANGSYQK NCVSLLRINA PSNSSSVEPL LQESSTHDSG GSIIVYAAID VHGVQVAMSG 720 EDTSFIPLLP TGFVLLPAPS QISPSDENVD GSVIGCLLTV GVQVLASTVP SAKLDLSSAS 780 SISAHLRSAL RQISAALGGG GSGGGARADS EPESA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | HD-ZIP family protein |