PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_10.761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35709.2 Da PI: 4.8168 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.4 | 3.2e-13 | 22 | 67 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l+++v+++G+++W++I ++ + Rt+k+c++rw + evm.model.AsparagusV1_10.761 22 KGPWMAEEDEVLLEYVRRHGPRDWSSIRSKGLLPRTGKSCRLRWVN 67 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3e-14 | 78 | 118 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ + +++ +++G++ W++Ia +++ gRt++++k++w evm.model.AsparagusV1_10.761 78 KFSPEEERIVIELQARFGNK-WARIATYLP-GRTDNDVKNFWS 118 79******************.*********.***********5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence |
MQGAAKVSSR RVNDQCGTIT RKGPWMAEED EVLLEYVRRH GPRDWSSIRS KGLLPRTGKS 60 CRLRWVNKLQ PNLKTGCKFS PEEERIVIEL QARFGNKWAR IATYLPGRTD NDVKNFWSTR 120 QKRLARMLQI PLPSKSNKNQ SKMPLTNDPP TFEVASLDLI PSEEESVESN QLSYVDSNRE 180 QQSLHQMPAD NHVLNPSTMP LLEPQLNWEP PQLQLENLPN PELDFPLLLE GSDRLIQQFE 240 DTGFEDNSSF LQITENMPFL GLGDGTSSVK IDEGHSAGAP DSFFDDFPVD MFDFMEQPQP 300 LPTPPGACGS LLCQR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 6e-64 | MYB family protein |