PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_10.21
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 566aa    MW: 62490.4 Da    PI: 10.1251
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_10.21genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.12.1e-842085642374
                         GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                  v+ Ll++ e++++gd   a+++Larl++l   sp g +p+ R a+ f+  L+  l++         p+ ++++ +++ +l +
  evm.model.AsparagusV1_10.21 208 VDHLLKASEFIDAGDPFSAREILARLNQLlpLSPLGlKPLLRSAFIFKDVLNVLLTS-------NQPSVPATPADVVLKLGS 282
                                  6789*************************999************************9.......334455555679****** PP

                         GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleet 161
                                  +k+fsevsP++ f+++t+ q++le+v   +r+Hi+Dfdi+ G++W +++q+La  Rp+  p l+iT+++s ++++  el+ t
  evm.model.AsparagusV1_10.21 283 YKAFSEVSPLIHFANFTCTQTLLEEVGAFDRIHIVDFDIGVGGHWSSFIQELAhRRPNAVPFLKITAFVSVAAFHPLELHLT 364
                                  *****************************************************5555*************9999******** PP

                         GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                  +e+L++fA+el+vpfef+++   ++e+++++eL +v++ +Ea+aVnl +  h+          + ++++klvk+l+Pkvvv 
  evm.model.AsparagusV1_10.21 365 RENLSHFAAELNVPFEFSLI---AVESFNPNELlAVSTpNEAIAVNLPFGSHYPQ--------PFPALIKLVKQLNPKVVVS 435
                                  *******************9...6778888776466657**********999986........6678*************** PP

                         GRAS 242 veqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                  v+q +d+ ++ +F++++l+a++ +++l+ds++a  +++++ ++k+Er++++++++ +   ++++        + Wr+++++a
  evm.model.AsparagusV1_10.21 436 VDQGCDRgDDLPFAHHLLHAFQACTVLLDSIDAA-GTNADVANKIERFIVQPRAEWAALGRHRA----AGVTGPWRAMFGSA 512
                                  *******8889********************999.8999*************998765544444....56679********* PP

                         GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  GF p ++s+++++qa++ll++v+++g++ve+++gsl+l+W++ +L svS+W+
  evm.model.AsparagusV1_10.21 513 GFVPWQFSNFTETQADCLLKRVQVRGFHVEKRQGSLFLYWQRGELGSVSSWK 564
                                  ***************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    
MKWMPFNFRG GGGGGVFGGQ ISYWTANSNN NNNKRKRSEV GIVVEPCSVL DHRQSPSPSH  60
TKRSSSRRAP EASLPNPPAW RRSPREHHHT TKQQRWTTEG KRRKRSGPPS SQPRSSITSG  120
LIARAGRPCE RMGGAVLLRR TAPPPPPVSC VADSMRAKTL PRGGIMATST SDEELKQPAK  180
HSTELLMGCR FRISHSIDEL HHHHQTIVDH LLKASEFIDA GDPFSAREIL ARLNQLLPLS  240
PLGLKPLLRS AFIFKDVLNV LLTSNQPSVP ATPADVVLKL GSYKAFSEVS PLIHFANFTC  300
TQTLLEEVGA FDRIHIVDFD IGVGGHWSSF IQELAHRRPN AVPFLKITAF VSVAAFHPLE  360
LHLTRENLSH FAAELNVPFE FSLIAVESFN PNELLAVSTP NEAIAVNLPF GSHYPQPFPA  420
LIKLVKQLNP KVVVSVDQGC DRGDDLPFAH HLLHAFQACT VLLDSIDAAG TNADVANKIE  480
RFIVQPRAEW AALGRHRAAG VTGPWRAMFG SAGFVPWQFS NFTETQADCL LKRVQVRGFH  540
VEKRQGSLFL YWQRGELGSV SSWKC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-85GRAS family protein