PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_10.1876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 37959.9 Da PI: 10.705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.6e-18 | 47 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll++ v +G g+W++++r g++R++k+c++rw +yl evm.model.AsparagusV1_10.1876 47 KGPWTPQEDKLLIEHVDIHGEGRWNSVSRLTGLKRSGKSCRLRWVNYL 94 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 100 | 144 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ evm.model.AsparagusV1_10.1876 100 RGKITPHEETIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 144 8999******************.*********.************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence |
MQDASGSGML MIKTGDTRYR AMKPAALLLM EAGQFGWSSG LDDGWRKGPW TPQEDKLLIE 60 HVDIHGEGRW NSVSRLTGLK RSGKSCRLRW VNYLRPDLKR GKITPHEETI ILELHARWGN 120 RWSTIARSLP GRTDNEIKNY WRTHFKKAKP TKASDRAQAR ARFLRQQQQG LQHNDDNQQQ 180 QHQHQLQLQE AERAIKGMMP QAQVAANIAQ EMQELAIMFP AFSMFQAADC SAGSTSEEGS 240 AWGSLWNLDD IGPGRPGLTA TFVIVGPRVE LTRPGSKSSA GSRPVTGPDP DARPSSGSGP 300 IRASTRRPEL GPKAWFDPGF GAFPGPERAQ ARPSPIRTPG WA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 3e-68 | MYB family protein |