PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_10.1876
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 343aa    MW: 37959.9 Da    PI: 10.705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_10.1876genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.6e-184794148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT++Ed+ll++ v  +G g+W++++r  g++R++k+c++rw +yl
  evm.model.AsparagusV1_10.1876 47 KGPWTPQEDKLLIEHVDIHGEGRWNSVSRLTGLKRSGKSCRLRWVNYL 94
                                   79********************************************97 PP

2Myb_DNA-binding52.31.3e-16100144147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    rg+ T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  evm.model.AsparagusV1_10.1876 100 RGKITPHEETIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 144
                                    8999******************.*********.************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MQDASGSGML MIKTGDTRYR AMKPAALLLM EAGQFGWSSG LDDGWRKGPW TPQEDKLLIE  60
HVDIHGEGRW NSVSRLTGLK RSGKSCRLRW VNYLRPDLKR GKITPHEETI ILELHARWGN  120
RWSTIARSLP GRTDNEIKNY WRTHFKKAKP TKASDRAQAR ARFLRQQQQG LQHNDDNQQQ  180
QHQHQLQLQE AERAIKGMMP QAQVAANIAQ EMQELAIMFP AFSMFQAADC SAGSTSEEGS  240
AWGSLWNLDD IGPGRPGLTA TFVIVGPRVE LTRPGSKSSA GSRPVTGPDP DARPSSGSGP  300
IRASTRRPEL GPKAWFDPGF GAFPGPERAQ ARPSPIRTPG WA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-68MYB family protein