PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_10.1562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27393.7 Da PI: 8.1484 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ ++++G g +W t +++ g++R++k+c++rw++yl evm.model.AsparagusV1_10.1562 14 RGPWSAEEDTKLKQFIERYGIGgNWITLPHKAGLKRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 38 | 3.9e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ evm.model.AsparagusV1_10.1562 69 GEFSDDEDRIICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MGRAPCCDKA NVKRGPWSAE EDTKLKQFIE RYGIGGNWIT LPHKAGLKRC GKSCRLRWLN 60 YLRPDIKHGE FSDDEDRIIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI 120 NSQRKSTATA NHHQQQHQSQ YQQPQLLSGL DSSCLPTVAT PSQDLFISSF LNNQYDQMSF 180 GRVERSCSSS DLIFESYLYG ELGQAPPLEH SYEEIKNLIN TSTNNVAGAD AYCTSHDDHC 240 RT* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-75 | MYB family protein |