PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_10.1562
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 243aa    MW: 27393.7 Da    PI: 8.1484
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_10.1562genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151462148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                   rg+W++eEd +l++ ++++G g +W t +++ g++R++k+c++rw++yl
  evm.model.AsparagusV1_10.1562 14 RGPWSAEEDTKLKQFIERYGIGgNWITLPHKAGLKRCGKSCRLRWLNYL 62
                                   89******************999************************97 PP

2Myb_DNA-binding383.9e-1269111246
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  evm.model.AsparagusV1_10.1562  69 GEFSDDEDRIICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                    789******************.*********.***********97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRAPCCDKA NVKRGPWSAE EDTKLKQFIE RYGIGGNWIT LPHKAGLKRC GKSCRLRWLN  60
YLRPDIKHGE FSDDEDRIIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI  120
NSQRKSTATA NHHQQQHQSQ YQQPQLLSGL DSSCLPTVAT PSQDLFISSF LNNQYDQMSF  180
GRVERSCSSS DLIFESYLYG ELGQAPPLEH SYEEIKNLIN TSTNNVAGAD AYCTSHDDHC  240
RT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-75MYB family protein