PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_10.1487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 185aa    MW: 19869.3 Da    PI: 7.405
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_10.1487genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33e-3971071100
                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                    +C aCk+lrrkC+++C++apyf +eq +++fa++hk+FGasn +kll++lp ++r++a+ s+ yeA+ar++dP+yG+v++
  evm.model.AsparagusV1_10.1487   7 PCGACKFLRRKCVQGCIFAPYFSHEQgAAHFAAIHKVFGASNASKLLSHLPATDRSEAALSISYEAQARLQDPIYGCVSH 86 
                                    7*************************89**************************************************** PP

                         DUF260  80 ilklqqqleqlkaelallkee 100
                                    i++lqqq+  l+a+l++lk++
  evm.model.AsparagusV1_10.1487  87 IFALQQQVVMLQAQLSSLKAQ 107
                                    ****************99876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MSGFGSPCGA CKFLRRKCVQ GCIFAPYFSH EQGAAHFAAI HKVFGASNAS KLLSHLPATD  60
RSEAALSISY EAQARLQDPI YGCVSHIFAL QQQVVMLQAQ LSSLKAQTAK DSANSSTSAP  120
INASMNLESR SCYNENNNNQ PNFISSGCYG DLEEGSSCSM ASHDGRVTDM EDLRSVAYAW  180
LKKI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-53LBD family protein