PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.609

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 300aa MW: 33525 Da PI: 4.9352

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.609	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	124	170	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h ++Er+RR+++ + +++L +++P k+ +Ka+iL+ +++Y+k++ evm.model.AsparagusV1_09.609 124 QEHVIAERKRREKLSEHLFTLSKIIPGT-----KRRDKASILKDTIDYLKEM 170 5799*********************9.....89************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MELSAADLFT DQEIEDLSFI DEWELSSLDQ DFSSTNIWDC FQETQSSESY NSSSPCFESP 60 LTPASIMEPV DKFLTPNKNW SFSSTNTGIL SFGHPCSDEG FKTVEAAIME SKNVKVKRSA 120 TGNQEHVIAE RKRREKLSEH LFTLSKIIPG TKRRDKASIL KDTIDYLKEM VQKLKTLEEQ 180 VAKRTMKSIF IPSEKSQSSG VGDVESGGNP PSADTLLEIE AKMSANIVLI KTHCKNRRGV 240 LLKALDEIEK LHLSVISSSS LPFSDQFLDI TVTAQVEEGF SMTVKDLLKK LNTSFREFM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	135	ERKRRE
2	131	136	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-28	bHLH family protein