PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.596

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 300aa MW: 33591.1 Da PI: 5.4971

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.596	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.5e-12	124	170	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h ++Er+RR++i + +++L +++P k+ +Ka+iL+ +++Y+k++ evm.model.AsparagusV1_09.596 124 QEHVIAERKRREKISEHLFTLHKIIPGT-----KRRDKASILKDTIDYMKEM 170 5799*********************9.....89************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MELSAADLFT NPEIEDLNFV DEWELSSLDQ DFSLTNIWDC FRETLSSESY NSCSPCFEAP 60 LTPANIGEPT EKFPEPDKNW SFSSTNTGIL SFGHPCSDER LKTVEVVIKE SKNAKVKRSA 120 TGNQEHVIAE RKRREKISEH LFTLHKIIPG TKRRDKASIL KDTIDYMKEM AQKLKTLEEQ 180 ATKETVKSVS VSCKKSQPSG ISDEESGDNP PSADTQFNIE AKISAKIVLI KIHCKNQRGM 240 LLKALGEIEK SHLSVISASS LPFSDQFLDI TVTAQVEEGF SMTVKDLLKK LNTAFRMFM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	135	ERKRRE
2	131	136	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	3e-33	bHLH family protein