PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.1462

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 273aa MW: 29951.7 Da PI: 7.8234

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.1462	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	9e-10	131	178	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ +L+ l+P + +k + Ka +L + ++Y++sLq evm.model.AsparagusV1_09.1462 131 SHSLAERVRRERISERMKKLQGLVPGC----DKVMGKALVLDEIINYVQSLQ 178 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MEAFLYQQHH PFYLDPIEMS LLPHHQNGGE HSNASSSCFT SHNSSEAMQE SSSTSLAKKR 60 KKCDGSCLTS CQPEGAKVNK SKRKKTNGAL KGELEEEKSK AKDSKASNAT NCEPPSGYIH 120 VRARRGQATD SHSLAERVRR ERISERMKKL QGLVPGCDKV MGKALVLDEI INYVQSLQNQ 180 VEFLSMKLAS VSPILYDAGV GYEAFMSQQE EMGSTSQQMS TAFERAANSQ LQVMNPAAPF 240 PLHGQGPPNT LISQDSGSFL MQVELNNMCS FQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	62	KKRKK
2	58	84	KKRKKCDGSCLTSCQPEGAKVNKSKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	8e-52	bHLH family protein