PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_09.1375
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family SBP
Protein Properties Length: 263aa    MW: 28861.1 Da    PI: 6.9502
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_09.1375genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.96.6e-242453578
                                   ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                            SBP 35 vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                                   v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  evm.model.AsparagusV1_09.1375  2 VGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQP 45
                                   7899*************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MVGGQEQRFC QQCSRFHLLV EFDEVKRSCR KRLDGHNRRR RKPQPDSMNS GSLFTTHQGP  60
RFSSYPQIFP TSASDPAWPV IVKTEEEPLY SHHQPLHFLD RQHHHHFSTS FTRKHFPFLQ  120
DSEPSICQPL LKTISAPENS GNTNKLFSPL DCALSLLSSP PQTSSINLGQ IVPSTDRIPM  180
GQPLISYSGL GLGRYSGSHG ESNHHVSTTG FSCSGMEDEH VGSTVLVSDA SDAEMHCQGL  240
FGVGGGEGSS DGGSQAIPFS WQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12643KRSCRKRLDGHNRRRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-25SBP family protein