PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_08.79 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | Trihelix | ||||||||
Protein Properties | Length: 220aa MW: 26511.7 Da PI: 8.0632 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.8 | 6.9e-14 | 1 | 45 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 mrerg++rsp+qCk+kw+nl +ryk ++ + + + ++cp+fd+l+ evm.model.AsparagusV1_08.79 1 MRERGYRRSPEQCKCKWKNLVNRYKGKETADPD----TGRQCPFFDELH 45 89***********************99999887....4678******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MRERGYRRSP EQCKCKWKNL VNRYKGKETA DPDTGRQCPF FDELHAVFTE RARNMQRLLE 60 MESGGASQSK KKLKRLAGDR SSEELLSDDE DDDDEESDVE RPTKGKKKKT EKVAHQQKAT 120 EKSRTGNNSN IHEVLQEFFQ QQQRMELQWQ EMMERRAQER ARFEQEWRQS MEKLERERIM 180 LEQAWREREE QRRMREESRA EKRDQLLTTL LNKLIQDEL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 112 | KKLKRLAGDRSSEELLSDDEDDDDEESDVERPTKGKKKKTEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 3e-17 | Trihelix family protein |