PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.613

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Trihelix

Protein Properties

Length: 691aa MW: 78922 Da PI: 5.3175

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.613	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.8	1.4e-13	430	514	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 W+++ + L++a ++ + ++++l+ W+ev+kk+ ++ ++rs qC+++++ l+k+ykk+k+++ + + +s ++y evm.model.AsparagusV1_08.613 430 WSEESTFILLDAWGDLFVKNGSKSLRSDEWSEVAKKVnQASRITRSDSQCRNRLDTLKKKYKKEKARMTEIVN-FKSDWVY 509 ***********************************778899***********************955.5569* PP trihelix 82 fdqle 86 f++++ evm.model.AsparagusV1_08.613 510 FEKMD 514 ****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MGALSNQSES RDVQGSTELV ELIDKDCNIP TSPTSCKSSD EDCMSTEEMR NNLDAAACET 60 LERGHMEYGC SHYRRRCRIR TPCCNEIFDC RHCHNEAKNS IDVDRMHRHE LPRHEVRQVI 120 CSLCGTEQEV RQVCIKCGVC MGKYFCNTCK LFDDDTSKQQ YHCDGCGICR IGGRENFFHC 180 YTCGCCYSIL LKNSHPCVER AMHHDCPVCF EYLFESTEGI AVLPCGHTIH MSCLNEMQDH 240 LQYACPLCSK SVYDMSKVWE TLDTEIAATP MPELYHNKLV QILCNDCGAM SKVRYHVVAQ 300 KCLNCKSYNT RLITYPSNPH HRHPPIPNQP QFSRNFADQD DDYESESNSD GINNDHNADT 360 NNSVHYQPHH YVEQREDEEP VDDNDNDEDN SSLESRGKRR KLDNFEFVPR KPPPIVANSK 420 PAVKNSPPDW SEESTFILLD AWGDLFVKNG SKSLRSDEWS EVAKKVNQAS RITRSDSQCR 480 NRLDTLKKKY KKEKARMTEI VNFKSDWVYF EKMDSLMPST STPVPAPATK RSPRGLACGV 540 DAGEYVFPNS RVYLNRANAT DEMRDSPGDT GTDSDDESDG LPPMMSEKKK VQSKALPNSS 600 FRMLAESIQK FGEVYEKIEN SKRQQMVELE RMRKEFHRDL EVQKRQILER AQAEIVRIRQ 660 EQGEDEEERM TEDSDGDDDE IDASAGNLSG *

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MGALSNQSES RDVQGSTELV ELIDKDCNIP TSPTSCKSSD EDCMSTEEMR NNLDAAACET  60
LERGHMEYGC SHYRRRCRIR TPCCNEIFDC RHCHNEAKNS IDVDRMHRHE LPRHEVRQVI  120
CSLCGTEQEV RQVCIKCGVC MGKYFCNTCK LFDDDTSKQQ YHCDGCGICR IGGRENFFHC  180
YTCGCCYSIL LKNSHPCVER AMHHDCPVCF EYLFESTEGI AVLPCGHTIH MSCLNEMQDH  240
LQYACPLCSK SVYDMSKVWE TLDTEIAATP MPELYHNKLV QILCNDCGAM SKVRYHVVAQ  300
KCLNCKSYNT RLITYPSNPH HRHPPIPNQP QFSRNFADQD DDYESESNSD GINNDHNADT  360
NNSVHYQPHH YVEQREDEEP VDDNDNDEDN SSLESRGKRR KLDNFEFVPR KPPPIVANSK  420
PAVKNSPPDW SEESTFILLD AWGDLFVKNG SKSLRSDEWS EVAKKVNQAS RITRSDSQCR  480
NRLDTLKKKY KKEKARMTEI VNFKSDWVYF EKMDSLMPST STPVPAPATK RSPRGLACGV  540
DAGEYVFPNS RVYLNRANAT DEMRDSPGDT GTDSDDESDG LPPMMSEKKK VQSKALPNSS  600
FRMLAESIQK FGEVYEKIEN SKRQQMVELE RMRKEFHRDL EVQKRQILER AQAEIVRIRQ  660
EQGEDEEERM TEDSDGDDDE IDASAGNLSG *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-54	Trihelix family protein