PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.472

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 410aa MW: 45599.2 Da PI: 9.1811

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.472	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	50	70	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H evm.model.AsparagusV1_08.472 50 CEICNKGFQRDQNLQLHRRGH 70 *******************88 PP
2	zf-C2H2	14.4	0.00011	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ evm.model.AsparagusV1_08.472 125 YKCEKCSKKYAVQSDWKAHSKTC 147 9******************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MSNFTSSTSE ASQNPTPAKK KRNLPGNPDP DAEVIALSPK TLMATNRFLC EICNKGFQRD 60 QNLQLHRRGH NLPWKLKQRA NKDVVKKKVY ICPEVSCVHH CPSRALGDLT GIKKHFSRKH 120 GEKKYKCEKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTIF SRRDSFITHR AFCDALAEES 180 SKAIRVPNPI SITAATPNNH NSINPNQLLF SSEQQKNTGI HLQPHFPSPN VHDHGELSLK 240 REQVINFNRQ AEAQKLWPHD LDQFSSFAPL HNIPLPSPYN QPSPHLSATA LLQKAAEMGA 300 TMSTHASSNA SNSSSFGLVH GGSSTTHSPL LQEMMIMSSS TNFSFNGETT NSSKRSEAVK 360 NHDDGLSTKD FLGLKAFQHK DLFSMGLDLD PCMRPSFEND PXLLSIFEL*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MSNFTSSTSE ASQNPTPAKK KRNLPGNPDP DAEVIALSPK TLMATNRFLC EICNKGFQRD  60
QNLQLHRRGH NLPWKLKQRA NKDVVKKKVY ICPEVSCVHH CPSRALGDLT GIKKHFSRKH  120
GEKKYKCEKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTIF SRRDSFITHR AFCDALAEES  180
SKAIRVPNPI SITAATPNNH NSINPNQLLF SSEQQKNTGI HLQPHFPSPN VHDHGELSLK  240
REQVINFNRQ AEAQKLWPHD LDQFSSFAPL HNIPLPSPYN QPSPHLSATA LLQKAAEMGA  300
TMSTHASSNA SNSSSFGLVH GGSSTTHSPL LQEMMIMSSS TNFSFNGETT NSSKRSEAVK  360
NHDDGLSTKD FLGLKAFQHK DLFSMGLDLD PCMRPSFEND PXLLSIFEL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-110	C2H2 family protein