PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.3592

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 365aa MW: 39278.5 Da PI: 5.9461

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.3592	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	48	93	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W++Iar + gR++k+c++rw + evm.model.AsparagusV1_08.3592 48 KGPWSPEEDAVLSRLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 93 79****************************.*********985 PP
2	Myb_DNA-binding	55	1.9e-17	100	144	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +++ a++ +G++ W++Iar + gRt++ +k++w++ evm.model.AsparagusV1_08.3592 100 RKPFTEEEDRIIIAAHAVHGNK-WAAIARLLE-GRTDNAIKNHWNST 144 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MEEPRPEGSM IASTPTASAA DAITIADDDD LANGSNEAAT AAAEDRVKGP WSPEEDAVLS 60 RLVSKFGARN WSLIARGIAG RSGKSCRLRW CNQLAPYVKR KPFTEEEDRI IIAAHAVHGN 120 KWAAIARLLE GRTDNAIKNH WNSTLKRRRF ELEHSRTAYC SPEDASADKT RGSSEETQSL 180 GDANSFKPVE GRDFNARENI CDQSEDKIQN QAQSCEPEIK DPPYLFRPVA RVSAFSMYSP 240 ASGQSSGSLL SRPAGAHGSL FQPSISNSGT SKLLDCICCE PEVPSRCGHG CCGSNKESSK 300 RSLLGPEFID FVETPPISSH ELAAVASDLS AIAWLKSGFQ TTGSRDYGSS LGNINISNGF 360 ASTF*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MEEPRPEGSM IASTPTASAA DAITIADDDD LANGSNEAAT AAAEDRVKGP WSPEEDAVLS  60
RLVSKFGARN WSLIARGIAG RSGKSCRLRW CNQLAPYVKR KPFTEEEDRI IIAAHAVHGN  120
KWAAIARLLE GRTDNAIKNH WNSTLKRRRF ELEHSRTAYC SPEDASADKT RGSSEETQSL  180
GDANSFKPVE GRDFNARENI CDQSEDKIQN QAQSCEPEIK DPPYLFRPVA RVSAFSMYSP  240
ASGQSSGSLL SRPAGAHGSL FQPSISNSGT SKLLDCICCE PEVPSRCGHG CCGSNKESSK  300
RSLLGPEFID FVETPPISSH ELAAVASDLS AIAWLKSGFQ TTGSRDYGSS LGNINISNGF  360
ASTF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	4e-91	MYB family protein