PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.3527

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 633aa MW: 70029.2 Da PI: 9.6523

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.3527	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	1e-07	538	587	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ evm.model.AsparagusV1_08.3527 538 RRPFSVSEVEALVQAVEKLGTGRWRDVKIRAFdnaKHRTYVDLKDKWKTL 587 678999******************9999989************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MVLKKRLLYG NTGYRVPPIP NVPKSAKGKR SVRKKTAKNG MCAFDLLAEV AEEILLEGET 60 SPNKIIGTPN ANSGKDTIKE EQLNDEKPVK DRACDLGSCN ENLLGPDHVA QGQVSPKKCS 120 QVVLEPSGAA HALLKSDTFN KEGCSDKQST YTDKLFGSNV KDETIVDRNA SNTCSLVDNT 180 DVDTRLHALT SSDSRVKVPH CGDHILRDSF SPQYRDEKLL VDRDDDENLS GRTNSSIVNN 240 KTLKNQGIEY SRIRKQLATK FWKIATTIRK DRDLSNADVE MKSSFRKRKI CYTRQRTQRS 300 SFKRRKVFQR CSISTYRAGI ISEESKISSS INGHLTSYGS EDFHVKLRIK SFTVPELFIE 360 IPETSTVGSL KRTVMEAVTA IFGGGLHVGV LRQGKKVRDD NKTLVQAGIS HGDKSSDLNF 420 ILEPSSSQAL PLLSCPEEPH LLLPNGTSES LSRFQDLGGP TSGGGKSDVG PESQLTPTGN 480 SLESNHNSSP CPADNLSLDK TAEDARPLTA IPSMNFEALP MVPVHKTRES ELVHRRIRRP 540 FSVSEVEALV QAVEKLGTGR WRDVKIRAFD NAKHRTYVDL KDKWKTLVHT AQISPQQRRG 600 QPVPQELLDR VLSAHSNWSQ QQAKLQSKPP AC*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MVLKKRLLYG NTGYRVPPIP NVPKSAKGKR SVRKKTAKNG MCAFDLLAEV AEEILLEGET  60
SPNKIIGTPN ANSGKDTIKE EQLNDEKPVK DRACDLGSCN ENLLGPDHVA QGQVSPKKCS  120
QVVLEPSGAA HALLKSDTFN KEGCSDKQST YTDKLFGSNV KDETIVDRNA SNTCSLVDNT  180
DVDTRLHALT SSDSRVKVPH CGDHILRDSF SPQYRDEKLL VDRDDDENLS GRTNSSIVNN  240
KTLKNQGIEY SRIRKQLATK FWKIATTIRK DRDLSNADVE MKSSFRKRKI CYTRQRTQRS  300
SFKRRKVFQR CSISTYRAGI ISEESKISSS INGHLTSYGS EDFHVKLRIK SFTVPELFIE  360
IPETSTVGSL KRTVMEAVTA IFGGGLHVGV LRQGKKVRDD NKTLVQAGIS HGDKSSDLNF  420
ILEPSSSQAL PLLSCPEEPH LLLPNGTSES LSRFQDLGGP TSGGGKSDVG PESQLTPTGN  480
SLESNHNSSP CPADNLSLDK TAEDARPLTA IPSMNFEALP MVPVHKTRES ELVHRRIRRP  540
FSVSEVEALV QAVEKLGTGR WRDVKIRAFD NAKHRTYVDL KDKWKTLVHT AQISPQQRRG  600
QPVPQELLDR VLSAHSNWSQ QQAKLQSKPP AC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	306	RKRKICYTRQRTQRSSFKRRK
2	287	307	RKRKICYTRQRTQRSSFKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-103	MYB_related family protein