PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.3237

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 550aa MW: 60230.5 Da PI: 4.8466

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.3237	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.8e-16	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed lv++v+++G g+W+ + + g+ R++k+c++rw ++l evm.model.AsparagusV1_08.3237 42 KGPWTSAEDAVLVEYVRKHGEGNWNNVQKNSGLSRCGKSCRLRWANHL 89 79******************************************9986 PP
2	Myb_DNA-binding	52.1	1.5e-16	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+el++++++ +G++ W++ a++++ gRt++++k++w++ evm.model.AsparagusV1_08.3237 95 KGAFSPEEEELIIKLHATMGNK-WARMAAHLP-GRTDNEIKNYWNT 138 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MSDTTSESNR KMLPKDQVSS LSIDEGSSGG SMGGRGSSGL KKGPWTSAED AVLVEYVRKH 60 GEGNWNNVQK NSGLSRCGKS CRLRWANHLR PNLKKGAFSP EEEELIIKLH ATMGNKWARM 120 AAHLPGRTDN EIKNYWNTRL KRLQRAGLPV YPSNLSFSAS DENQRGQNVG NFSSIGKNYN 180 ETLQGNGLDS PDFLFDDFKM APKFSDISVS NVLNLGFGSP SYSFINQSLD CKRLQGNENF 240 LHMFENFSDD PSERINLTLG TSYPYDPDPL SKNISPYQGA IFGSHALTNG NFSTSRPFLG 300 TVKSELPSLQ YTESDPNFLF GYDSYDSSPQ PEAVDSYIQS PPAASLQSEC CSPRNSGLLQ 360 EVLQESHAMY NNGNRLSYDK SSNSSIMTPS DVVDSLGNNF SEASVWNDGD PISPLGCSAS 420 SVFKEYTTPI SGSSLDELPL SRRSSGSDIT LPSIEDVSTS SITERDIKPK PEFLRPDALL 480 GSAWLLDNSH IAKDHNNMNN AVSTLLGDDC CIDRKPPPNE TSYIDTGGLG LDSYPWSNMP 540 GVHQMFENL*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MSDTTSESNR KMLPKDQVSS LSIDEGSSGG SMGGRGSSGL KKGPWTSAED AVLVEYVRKH  60
GEGNWNNVQK NSGLSRCGKS CRLRWANHLR PNLKKGAFSP EEEELIIKLH ATMGNKWARM  120
AAHLPGRTDN EIKNYWNTRL KRLQRAGLPV YPSNLSFSAS DENQRGQNVG NFSSIGKNYN  180
ETLQGNGLDS PDFLFDDFKM APKFSDISVS NVLNLGFGSP SYSFINQSLD CKRLQGNENF  240
LHMFENFSDD PSERINLTLG TSYPYDPDPL SKNISPYQGA IFGSHALTNG NFSTSRPFLG  300
TVKSELPSLQ YTESDPNFLF GYDSYDSSPQ PEAVDSYIQS PPAASLQSEC CSPRNSGLLQ  360
EVLQESHAMY NNGNRLSYDK SSNSSIMTPS DVVDSLGNNF SEASVWNDGD PISPLGCSAS  420
SVFKEYTTPI SGSSLDELPL SRRSSGSDIT LPSIEDVSTS SITERDIKPK PEFLRPDALL  480
GSAWLLDNSH IAKDHNNMNN AVSTLLGDDC CIDRKPPPNE TSYIDTGGLG LDSYPWSNMP  540
GVHQMFENL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	5e-92	MYB family protein