PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.300

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Trihelix

Protein Properties

Length: 380aa MW: 43153.9 Da PI: 4.4185

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.300	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.3	1.1e-14	105	189	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 W+++ + +L+ea ++ + +r++l+ W+ev+kk+ ++ ++rs qC+++++ l+k+ykk+k+++ + ++ +s + y evm.model.AsparagusV1_08.300 105 WSEDSTFVLLEAWGDLFVSNGRKSLRFDEWSEVAKKVnQDSRITRSDSQCRNRLDTLKKKYKKEKARMAEI-PNFKSDWIY 184 ***********************************778889**********************97.88889 PP trihelix 82 fdqle 86 f++++ evm.model.AsparagusV1_08.300 185 FKKMD 189 **8 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MDGVEDDARY AHKRHHQTQP QFSRNFTDQE GDDEYESNSD GIKSDNEGEG AIGVDEDDGD 60 YNSSMESRGK RRKLDNFEFV PRKPAPLPVV ANSRSSGVKN SPPDWSEDST FVLLEAWGDL 120 FVSNGRKSLR FDEWSEVAKK VNQDSRITRS DSQCRNRLDT LKKKYKKEKA RMAEIPNFKS 180 DWIYFKKMDS FMSSPSPAPV QATRSSPLRL KCGVDAGEYV FSNSRVYLNR ANAMDEMRDS 240 PGDTGTGDEE GGDDDDGDDS DGLPPTMSEK RRRGGSGSFP SLSFKMLSDS IQKFSEVYEK 300 IESNKRQQMV ELERMRMEFH RDLEVQKRQI LERGQAEIAR IRQEEGEDEE EEEEEERMVG 360 EGDGDEDEEM NGSAENLSS*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MDGVEDDARY AHKRHHQTQP QFSRNFTDQE GDDEYESNSD GIKSDNEGEG AIGVDEDDGD  60
YNSSMESRGK RRKLDNFEFV PRKPAPLPVV ANSRSSGVKN SPPDWSEDST FVLLEAWGDL  120
FVSNGRKSLR FDEWSEVAKK VNQDSRITRS DSQCRNRLDT LKKKYKKEKA RMAEIPNFKS  180
DWIYFKKMDS FMSSPSPAPV QATRSSPLRL KCGVDAGEYV FSNSRVYLNR ANAMDEMRDS  240
PGDTGTGDEE GGDDDDGDDS DGLPPTMSEK RRRGGSGSFP SLSFKMLSDS IQKFSEVYEK  300
IESNKRQQMV ELERMRMEFH RDLEVQKRQI LERGQAEIAR IRQEEGEDEE EEEEEERMVG  360
EGDGDEDEEM NGSAENLSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	8e-52	Trihelix family protein