PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_08.29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26396.6 Da PI: 5.1266 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.4e-19 | 32 | 85 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++f++eq++ Le +Fe + ++ +++ +LAk+lgL rqV +WFqN+Ra++k evm.model.AsparagusV1_08.29 32 KKRRFSEEQVKSLELMFETQTKLEPRKKLQLAKELGLHPRQVAIWFQNKRARWK 85 5679*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.1 | 5.6e-39 | 32 | 123 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 kkrr+s+eqvk+LE +Fe+++kLep++K +la+eLgl+prqva+WFqn+RAR+k+kqlE++y+aL++ ydal ++ e+L++e evm.model.AsparagusV1_08.29 32 KKRRFSEEQVKSLELMFETQTKLEPRKKLQLAKELGLHPRQVAIWFQNKRARWKSKQLERQYAALRADYDALLSNFESLKHE 113 9********************************************************************************* PP HD-ZIP_I/II 84 veeLreelke 93 ++ L+++l++ evm.model.AsparagusV1_08.29 114 KQLLAKQLQK 123 *******987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence |
MVESEDYSAT EEADGFMWMD PLSTKKGNAN DKKRRFSEEQ VKSLELMFET QTKLEPRKKL 60 QLAKELGLHP RQVAIWFQNK RARWKSKQLE RQYAALRADY DALLSNFESL KHEKQLLAKQ 120 LQKLAELLEK PMEERGNESD QEKADQRPNL MLTEKTEMRL MSSDDDEENR HTRCSEKEKD 180 FFSGPPTGGS LVPSEQQFCF HQPSWPTDQA CANSQWWEFW PMNE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-32 | HD-ZIP family protein |