PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.2699

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 477aa MW: 51044.7 Da PI: 6.0805

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.2699	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	315	360	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq evm.model.AsparagusV1_08.2699 315 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 360 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MDDFIDPFLS SSSWSDHVNA SSRSSWGGSI ESQSNGLLTD SIVAYGDEKS LPVCMISSPH 60 IMSNVAAGHL DLHAHAHIMG NETHENNFSL KDVYESKSTS GSYGRELNTS CSVTLPNSAL 120 TVSSSIESNG SEPSKFDSIS SVPSMWPPSY SGISPFMEQG KLESFGFQGV ESNADELGKT 180 YIENGKHPHL DNSAAAASRH INGCNGINST NFSNLNLLQQ MKMTNGGLHP HQEEQNGVNN 240 LHLPSFTAGS LLNLSKSSGV QACQQLAQST EGNILKNQTS NSSIQHQATP ANNGNCNGTT 300 KPRVRARRGQ ATDPHSIAER LRREKIAERM KNLQELVPNS NKTDKASMLD EIIDYVKFLQ 360 LQVKVLSMSR LGAAGAVVPL ITDIQAEGSG TLHLSSIGNG STDLSEAEDN LAFEQEVVKL 420 MESNVTAAMQ FLQNKGLCLM PIALASAIST QKGSSSASIP PERRKSDVGV TKKEEP*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MDDFIDPFLS SSSWSDHVNA SSRSSWGGSI ESQSNGLLTD SIVAYGDEKS LPVCMISSPH  60
IMSNVAAGHL DLHAHAHIMG NETHENNFSL KDVYESKSTS GSYGRELNTS CSVTLPNSAL  120
TVSSSIESNG SEPSKFDSIS SVPSMWPPSY SGISPFMEQG KLESFGFQGV ESNADELGKT  180
YIENGKHPHL DNSAAAASRH INGCNGINST NFSNLNLLQQ MKMTNGGLHP HQEEQNGVNN  240
LHLPSFTAGS LLNLSKSSGV QACQQLAQST EGNILKNQTS NSSIQHQATP ANNGNCNGTT  300
KPRVRARRGQ ATDPHSIAER LRREKIAERM KNLQELVPNS NKTDKASMLD EIIDYVKFLQ  360
LQVKVLSMSR LGAAGAVVPL ITDIQAEGSG TLHLSSIGNG STDLSEAEDN LAFEQEVVKL  420
MESNVTAAMQ FLQNKGLCLM PIALASAIST QKGSSSASIP PERRKSDVGV TKKEEP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	3e-65	bHLH family protein