PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.2640
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 279aa    MW: 30608.3 Da    PI: 6.3544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.2640genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.4e-061712081254
                                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  evm.model.AsparagusV1_08.2640 171 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 208
                                    677888999*******998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MADEFHAGST LSCWSTIRNS SPFEFSPSIS SCSSSILPVE LNQTPTGFGF SPMNNEVLLP  60
GLFEPADPLR DMNGSVQPAS WASNFSSPQF NSRVSSASNQ QMNFSNNAAF WNPSANLAPT  120
KFSEKRFEDE SCCSNQTTMK PSETKKQGND QPASKKQRLA TPSPLPTFKV RKEKLGDRIT  180
ALQQLVSPFG KTDTASVLHE AIEYIKFLHG QVSALSTPYL KNGHQMQHQK NLENANVEGL  240
EDLRSRGLCL VPISDTFSVA SETPLMELWA PTFLGNYM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.14e-50bHLH family protein