PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.2481

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 401aa MW: 44986.2 Da PI: 7.1966

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.2481	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+d++++ G+g W+ +a+ g+ R++k+c++rw ++l evm.model.AsparagusV1_08.2481 28 KGPWTPAEDAILIDYINRNGTGKWNVVAKNSGLLRCGKSCRLRWMNHL 75 79****************************99**********97 PP
2	Myb_DNA-binding	33.6	8.8e-11	82	124	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ + eE++l+ ++ q+G++ W++ ++++ gRt++++k++w++ evm.model.AsparagusV1_08.2481 82 GSLSSEEEKLIQLLHDQFGNK-WAKFVKYLP-GRTDNEIKNYWNT 124 67799**************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MYLFIAAFML VYKSRDNDNG DDLSKFRKGP WTPAEDAILI DYINRNGTGK WNVVAKNSGL 60 LRCGKSCRLR WMNHLRPDLK KGSLSSEEEK LIQLLHDQFG NKWAKFVKYL PGRTDNEIKN 120 YWNTRLKRRG QQPPPAAHDS CTPRNITEVR QAPTSNLELI MGESQHPAII ANNRNPDPAT 180 TVRNPNYSYC ELPKRPYVYS DGGSCVPPLQ TQRFPLQDDG SCFQPLSTPW LDSPSAYSSP 240 PLTWEDRQSS CILPTSQFDS SCAYSSSLPS LLSYSSSTCT YPLPTPQFDS PSAYSCLSAD 300 SRQPAYPSSS QRYIDSHNIA HSFPSPIIMD QTLQQQGRGL IASTSNANMD ASAHQAHQEQ 360 AGTDEEAFIP NQLEEDQMPT TPTHVIHPNH HLHPNRHLLH *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MYLFIAAFML VYKSRDNDNG DDLSKFRKGP WTPAEDAILI DYINRNGTGK WNVVAKNSGL  60
LRCGKSCRLR WMNHLRPDLK KGSLSSEEEK LIQLLHDQFG NKWAKFVKYL PGRTDNEIKN  120
YWNTRLKRRG QQPPPAAHDS CTPRNITEVR QAPTSNLELI MGESQHPAII ANNRNPDPAT  180
TVRNPNYSYC ELPKRPYVYS DGGSCVPPLQ TQRFPLQDDG SCFQPLSTPW LDSPSAYSSP  240
PLTWEDRQSS CILPTSQFDS SCAYSSSLPS LLSYSSSTCT YPLPTPQFDS PSAYSCLSAD  300
SRQPAYPSSS QRYIDSHNIA HSFPSPIIMD QTLQQQGRGL IASTSNANMD ASAHQAHQEQ  360
AGTDEEAFIP NQLEEDQMPT TPTHVIHPNH HLHPNRHLLH *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	5e-49	MYB family protein