PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_08.2427 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28308.6 Da PI: 11.1947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W+ I+ g+ R+ k+c++rw +yl evm.model.AsparagusV1_08.2427 14 KGPWTPEEDIILVSYIREHGPGNWRVIPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l evm.model.AsparagusV1_08.2427 67 RGNFTAQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MGSPPCGNKV GVKKGPWTPE EDIILVSYIR EHGPGNWRVI PTNTGLMRCS KSCRLRWTNY 60 LKPGIKRGNF TAQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKHE 120 STRHDNNSSN HQQKNSKGLW ESRLQTDIQK AKQALHAALS LHKPEPTIEL KPTTDSLLNS 180 VSTSSMTTYA SSTVNISSTP PAIRWTWWPF LILRRRRCRK RSRGAQSRGR CNWSCLRLGC 240 LMRRRT* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 9e-85 | MYB family protein |