PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_08.1428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 355aa MW: 39160.9 Da PI: 6.0681 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.3e-12 | 156 | 201 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq evm.model.AsparagusV1_08.1428 156 HIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 201 899***********************.....9******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence |
MDSSTSRWFS DPDFMDDPSF HQWELGSLDQ FNDTHNIWDD IQQSLSSESY NSFNNPNSSV 60 TSNTLSCGSA GGGGGSSTDS GERPKKMTKT TSNNWSSDTP SILSFGNPDS LEDQHELYKS 120 IVGVVVPKEG PVLKPKKVVV AATAATTRPL LHNHDHIIAE RKRREKLSQR FIALSAIVPG 180 LKKMDKASVL GDAIKYLKQL QEKVKTLEEQ SEPKKVESAV LVEKAQSLED DVSSSDENFN 240 GAKPIVVHDE HKNNNYNSDD KNNEKRKDGN NAEIEAKLSE KSVLLRIHCR KSKGVLVKAL 300 TEIENLNLSV VNTSCVTFTN CALDVTVVAE IEEGFCLTVK ELVKKLNTAF KQFM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 165 | ERKRRE |
2 | 161 | 166 | RKRREK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 8e-48 | bHLH family protein |