PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.1428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 355aa    MW: 39160.9 Da    PI: 6.0681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.1428genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.3e-12156201555
                                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  evm.model.AsparagusV1_08.1428 156 HIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 201
                                    899***********************.....9******************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MDSSTSRWFS DPDFMDDPSF HQWELGSLDQ FNDTHNIWDD IQQSLSSESY NSFNNPNSSV  60
TSNTLSCGSA GGGGGSSTDS GERPKKMTKT TSNNWSSDTP SILSFGNPDS LEDQHELYKS  120
IVGVVVPKEG PVLKPKKVVV AATAATTRPL LHNHDHIIAE RKRREKLSQR FIALSAIVPG  180
LKKMDKASVL GDAIKYLKQL QEKVKTLEEQ SEPKKVESAV LVEKAQSLED DVSSSDENFN  240
GAKPIVVHDE HKNNNYNSDD KNNEKRKDGN NAEIEAKLSE KSVLLRIHCR KSKGVLVKAL  300
TEIENLNLSV VNTSCVTFTN CALDVTVVAE IEEGFCLTVK ELVKKLNTAF KQFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERKRRE
2161166RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-48bHLH family protein