PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_08.1167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 211aa MW: 23963.1 Da PI: 8.1702 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.6e-19 | 51 | 105 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eql+ Le F ++r++ ++ +LA+klgL+ +qV vWFqNrRa++k+ evm.model.AsparagusV1_08.1167 51 KKRRLSDEQLRFLEINFGEERKLESGRKMQLASKLGLDPKQVAVWFQNRRARWKN 105 66789************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118 | 5.1e-38 | 51 | 142 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 kkrrls+eq+++LE +F ee+kLe+ rK++la++Lgl+p+qvavWFqnrRAR+k+kq+E++y +Lk+++d+++ e+++Le evm.model.AsparagusV1_08.1167 51 KKRRLSDEQLRFLEINFGEERKLESGRKMQLASKLGLDPKQVAVWFQNRRARWKNKQMEEEYLKLKTKLDSVVVEKCHLE 130 9******************************************************************************* PP HD-ZIP_I/II 82 keveeLreelke 93 +ev +L+e+l+e evm.model.AsparagusV1_08.1167 131 NEVLSLKERLSE 142 *******99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MIKQVLEEKM LFSSAPSSEL YTSIPQGDQR RTRRRRRRAK VDSDGLSAES KKRRLSDEQL 60 RFLEINFGEE RKLESGRKMQ LASKLGLDPK QVAVWFQNRR ARWKNKQMEE EYLKLKTKLD 120 SVVVEKCHLE NEVLSLKERL SEAEEKIKRL SKGGDGGADD GGSPSSSSTE TYQPPPPPPA 180 ALGEFGEMGD ELLYINEDNC VIDYGYLFGM * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 37 | RRTRRRRR |
2 | 30 | 38 | RRTRRRRRR |
3 | 33 | 38 | RRRRRR |
4 | 33 | 54 | RRRRRRAKVDSDGLSAESKKRR |
5 | 34 | 55 | RRRRRRAKVDSDGLSAESKKRR |
6 | 35 | 56 | RRRRRRAKVDSDGLSAESKKRR |
7 | 36 | 57 | RRRRRRAKVDSDGLSAESKKRR |
8 | 99 | 107 | RRARWKNKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 6e-44 | HD-ZIP family protein |