PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 185aa MW: 20054.8 Da PI: 5.7063 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.1e-08 | 103 | 123 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f r G+Ck G++C+F Hg evm.model.AsparagusV1_07.808 103 PCLYFNR-GFCKNGSSCSFLHG 123 8******.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MDAYEATRIV FSRIQALDPE NAAKIMGLLL IQDHGDKEMI RLAFGPETLL HSLILKARKE 60 LGLGPNNPSS WAQQPLDDDE LLLQAAAATP ESLYYDQGFG WKPCLYFNRG FCKNGSSCSF 120 LHGAADDMSR RCVGGGGAAV PRDNADEVQK SAPRCIWQRR GGGVSLLSDE LLVGQVLQLY 180 ASAK* |