PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_07.806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 30625.1 Da PI: 8.4968 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 57 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+q+G+ +W++Ia+++ gR++k+c++rw++ evm.model.AsparagusV1_07.806 57 RGHWRPAEDAKLRELVAQHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 102 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.8e-18 | 109 | 152 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ evm.model.AsparagusV1_07.806 109 RKAFSEEEEEKLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHV 152 789*******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence |
MGFFPLCPPP FSGDLSSSME ILKGDQGHYG NEKSHKSGDQ ERSRDHESVL QSKLCARGHW 60 RPAEDAKLRE LVAQHGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRK AFSEEEEEKL 120 LAAHRAYGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE QGSACRRRKP SPPNNSSGSN 180 SQTLIPKCVQ LNISNNSNSG DSTITSNRDF PFDLFMGSQE KVVAANNGGL FEKTADSDSN 240 SEASAAESVA FNHIEYEREK ISLPFIDFLG VGAT* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-69 | MYB family protein |