PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 24925.1 Da PI: 8.488 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.9 | 6.3e-07 | 178 | 202 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 + ErrRR+++N+++ Lr+++Pk + evm.model.AsparagusV1_07.555 178 MSERRRRKKLNDRLYMLRSVVPKiS 202 68********************944 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MSITYPSLSS LSSQLVSNVA VLNLFTVVTK RRNIKRMNSN WYLTEPLQNH QESFSSLLST 60 NPFGLDPFGL TAPLSFTDLN PTAQFQTTHL HETGFQAFET PKFVSGSKIL RPAEANPSIG 120 AQPTLIGEEN EEEGVEDGSF DGSGLNCEFE ENVKSLENNE SHESRRKRNR AAPAKNLMSE 180 RRRRKKLNDR LYMLRSVVPK ISKVRDAVLN SLCFRCWDLS L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 186 | RRKRNRAAPAKNLMSERRRRKK |
2 | 166 | 186 | RKRNRAAPAKNLMSERRRRKK |
3 | 166 | 187 | RRKRNRAAPAKNLMSERRRRKK |
4 | 180 | 187 | ERRRRKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.1 | 7e-14 | bHLH family protein |