PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19459.2 Da PI: 8.7195 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.7 | 7e-42 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i+ evm.model.AsparagusV1_07.421 18 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPEPQRADAANSLVYEANVRLRDPVYGCMGAIS 98 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq++ l+aela+++ e evm.model.AsparagusV1_07.421 99 ALQQQVQALEAELAMVRGE 117 **************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MSRRNLLGPV GTLNTITPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HKVFGASNVS 60 KMLMEVPEPQ RADAANSLVY EANVRLRDPV YGCMGAISAL QQQVQALEAE LAMVRGEILK 120 HKYRQSNAGI NIPAALLASI PTPPPPPSVQ AASSSSSMYT PASNSTDYSS ITNENVTYFG 180 * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-67 | LBD family protein |