PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3931
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 319aa    MW: 35599 Da    PI: 4.7283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3931genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.9e-191461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd++l+ +++++G g+W+t ++  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_07.3931 14 KGPWTPEEDQKLIAYIQKHGCGSWRTLPKNAGLSRCGKSCRLRWTNYL 61
                                   79********************************************97 PP
2Myb_DNA-binding54.72.3e-1767111147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  evm.model.AsparagusV1_07.3931  67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                                    89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MGRAPCCDKE GLKKGPWTPE EDQKLIAYIQ KHGCGSWRTL PKNAGLSRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSTLLA NPTLLINPSQ YDISSLLGME PLVSPELLRL ATDLLSSQCQ  180
DLTEHAQLQD PIAQFLSDSQ LIQPNGSQFG PDGMTCDFSE SFVPAAASNT ISYDNLEQPI  240
PQLVSADSSN FYLPNNQLNY TVTTSVLSTP ISSPTTQLNS SSSTYINSSS NTEDERDSYC  300
SELFEFQVPD LLDVSEFM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-96MYB family protein