PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.307
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 246aa    MW: 28206.6 Da    PI: 6.4043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.307genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.8e-181259148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT++Ed++lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  evm.model.AsparagusV1_07.307 12 KGPWTEQEDLQLVCFVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 59
                                  79********************************************97 PP
2Myb_DNA-binding55.61.2e-1765110148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rgr+T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  evm.model.AsparagusV1_07.307  65 RGRMTPQEERLVLELHSKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 110
                                   89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MVSAMKEQET RKGPWTEQED LQLVCFVRLF GERRWDFIAK VSGLNRTGKS CRLRWVNYLH  60
PGLKRGRMTP QEERLVLELH SKWGNRWSRI ARRLPGRTDN EIKNYWRTHM RKMAQEAKRN  120
SSPPSASSSS NSLSSMSESP AEPANADNIT EGNITTAFGE NEGLKVYPMD QIWNEIETSE  180
SVSGLSLEEH KDEACNMSCP PPLSSLMWDY NSESLWKIDD HEEFSMIPPM SDLLVSNYHH  240
GKEQS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.37e-77MYB family protein