PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.2991
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HB-PHD
Protein Properties Length: 975aa    MW: 109637 Da    PI: 7.6632
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.2991genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.94.1e-14750796652
                                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                       Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                    +f++   + L e F+kn+yp+++e+e LAk+lgLt +qV+ WF N R
  evm.model.AsparagusV1_07.2991 750 SFSEAARKKLCEIFQKNQYPTRAEKESLAKELGLTYQQVQRWFINSR 796
                                    799999***************************************99 PP
2Homeobox20.96.3e-078418791048
                                    HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHH CS
                       Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWF 48 
                                     ql  L e F++n+y++ + +e L++ lgLt +q   WF
  evm.model.AsparagusV1_07.2991 841 RQLLGLHESFQENQYLTWQNKESLSQVLGLTYQQEHGWF 879
                                    69999*****************************99999 PP
3PHD39.21.6e-13425479150
                                    SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                            PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                                    +C+ Cg+     +++++lCdg C++ fH+kCl+++l se++p g   wlC+ C +
  evm.model.AsparagusV1_07.2991 425 FCATCGSkdLSPDNDIILCDGlCDRGFHQKCLNPPLLSEDIPPGdeGWLCPACCC 479
                                    7******76666********77********************9999*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    
MASPIPSSSS NEKRSILRRS PRHQTHELNA GTTEHGSKKV GFAGFENISN EKTSNLRRSP  60
RKQTHVPHSG TTENEAKKVG FAGLQNVSNE KRSNLRQSPR HQTHEQNSGT TENGSEEVGF  120
VGFQNISNEK RSILRRSPRH QTRELNSGTT ENGSKKVEFA GVHSINNEKR RILRQSPRNQ  180
THELNYGTME NGSKKVNFAG FESISNEKKS FLRRSPRHQS HELDSETTEN ESKSINKPAD  240
HGEHVLPKLG KVDRNNDLAK SSSKSPCEQN RDSSEVKGRR YPLRTSLGTA RITQSISKTE  300
NQHELVPKPL NLLRRRRRRR RKKGDKVKKA SKDEFFVIMK RVRYLLTRMN YEQNLIDAYS  360
GEGWKGQSAD KLRPEKELER AKSEIVRRKF KIRELFRHLD SLSSEGRIEA SLFDSEGQLN  420
SEDIFCATCG SKDLSPDNDI ILCDGLCDRG FHQKCLNPPL LSEDIPPGDE GWLCPACCCK  480
IDCIKLLNEL QGSNLSIKDT WEKVFPEVVA MTNEDKKRDD LPSNDSEDYD YGSDGSEVDF  540
ERSGSTSSED DSDDDDFDPN DSNVDKSVPK YGSSSDESNF KSDSAKFCIE LRKTLRAKKD  600
SAPSVRNLKP IANSGEGTCT VDICNSEIPS VLEPGLDQEN LLTSGKRNLE NFELKHLSDE  660
TYETSPSDSS EDENWSESAD INMPNRRKKY ANRKEPYGPS NANTRTVSHV HETTPSKTYP  720
ALDASAMEHV EHHGCSEPGS IEFSVSTSKS FSEAARKKLC EIFQKNQYPT RAEKESLAKE  780
LGLTYQQVQR WFINSRHSFC APTKEASPNE VPSASNDIAA TNENTKCINE VGKDGQEAVA  840
RQLLGLHESF QENQYLTWQN KESLSQVLGL TYQQEHGWFM GSHSICLSTN EAPLNGLPSP  900
NKDNSATNEN IRGINLNYSG GSISPMYATE GIKRKNPISD EQLNVGDEQC SMSKVDKERE  960
KAVARELRKM KKRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314319RRRRRR
2314320RRRRRRR
3314321RRRRRRRR
4314322RRRRRRRRK
5315320RRRRRR
6315321RRRRRRR
7315322RRRRRRRR
8315323RRRRRRRRK
9316321RRRRRR
10316322RRRRRRR
11317323RRRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.18e-82HB-PHD family protein