PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.2971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 16742.2 Da PI: 8.629 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 41.1 | 5e-13 | 2 | 60 | 1 | 54 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer 54 +C++C+vlr++C+++Cvl+p + +++q++++ +v+k+FG++ +l+ l+++pe++ evm.model.AsparagusV1_07.2971 2 SCSGCRVLRKGCSDSCVLRPSIvwieaAEAQAHATVFVAKFFGRAGLLSSLSSVPESQC 60 6*********************9999777889**********************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MSCSGCRVLR KGCSDSCVLR PSIVWIEAAE AQAHATVFVA KFFGRAGLLS SLSSVPESQC 60 PVDFVLRGGI PRPMAPELGV STANGLTRLE PGPITSSSTS KKKEKLISLG QCLTRRPKRR 120 RTATPSDESA MTSELRRDEA QFDEEQTQLL DLFV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 121 | KKKEKLISLGQCLTRRPKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-31 | LBD family protein |