PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.2971
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 155aa    MW: 16742.2 Da    PI: 8.629
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.2971genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26041.15e-13260154
                         DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer 54
                                   +C++C+vlr++C+++Cvl+p +     +++q++++ +v+k+FG++ +l+ l+++pe++ 
  evm.model.AsparagusV1_07.2971  2 SCSGCRVLRKGCSDSCVLRPSIvwieaAEAQAHATVFVAKFFGRAGLLSSLSSVPESQC 60
                                   6*********************9999777889**********************99986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MSCSGCRVLR KGCSDSCVLR PSIVWIEAAE AQAHATVFVA KFFGRAGLLS SLSSVPESQC  60
PVDFVLRGGI PRPMAPELGV STANGLTRLE PGPITSSSTS KKKEKLISLG QCLTRRPKRR  120
RTATPSDESA MTSELRRDEA QFDEEQTQLL DLFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101121KKKEKLISLGQCLTRRPKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-31LBD family protein