PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.2467

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 511aa MW: 56639 Da PI: 5.0881

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.2467	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4e-12	272	315	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr l+Pk +K++ a+iL A+eY+ +Lq evm.model.AsparagusV1_07.2467 272 VAERKRRKKLNDRLYALRALVPKI-----TKMDRASILGDAIEYVMELQ 315 68*******************7.....7**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MKVLSYSSVV EGLRPLVGGN GWDYCILWKL SQDQRFLEWM GCCCSGTEAS IANGGGLFSG 60 DETFQKSPCR DLMLQHPRTR ACDALSEFPS SIPLDSSLGI YAQVLMSNQP TWQTLHDAVG 120 AKTRVLVPIA GGLVELLVSK QVAENQQMTD FIMSQCNGSI YDHPTAGNFL DDQSFQWEAS 180 AGGQSQPYAS PMNIFDQLQL DAAATMDSTG YGQQAGLTSV HQQKESAPAE KESVKHEGGS 240 ARGDSGTEGS EDDEEGRAVG KNGKRHHAKN LVAERKRRKK LNDRLYALRA LVPKITKMDR 300 ASILGDAIEY VMELQKQVKD LQDELENESN PDDTDSKQIE SNYDNVETGN RNGMINYNLM 360 ELEESLNATS TRNAKTVDQS NNEEKGNQME PQVEVKQLEA NDFYLKVFCE HKVGGFARLM 420 EAMSSLGLEV TNASVTTLQS LVLNVFRVQK RDNETMQVDQ VRDSLLELTR GPIRGWPEPG 480 HTTENRGGDC HHDNGHHLHH HQLHYVHQQP *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MKVLSYSSVV EGLRPLVGGN GWDYCILWKL SQDQRFLEWM GCCCSGTEAS IANGGGLFSG  60
DETFQKSPCR DLMLQHPRTR ACDALSEFPS SIPLDSSLGI YAQVLMSNQP TWQTLHDAVG  120
AKTRVLVPIA GGLVELLVSK QVAENQQMTD FIMSQCNGSI YDHPTAGNFL DDQSFQWEAS  180
AGGQSQPYAS PMNIFDQLQL DAAATMDSTG YGQQAGLTSV HQQKESAPAE KESVKHEGGS  240
ARGDSGTEGS EDDEEGRAVG KNGKRHHAKN LVAERKRRKK LNDRLYALRA LVPKITKMDR  300
ASILGDAIEY VMELQKQVKD LQDELENESN PDDTDSKQIE SNYDNVETGN RNGMINYNLM  360
ELEESLNATS TRNAKTVDQS NNEEKGNQME PQVEVKQLEA NDFYLKVFCE HKVGGFARLM  420
EAMSSLGLEV TNASVTTLQS LVLNVFRVQK RDNETMQVDQ VRDSLLELTR GPIRGWPEPG  480
HTTENRGGDC HHDNGHHLHH HQLHYVHQQP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	281	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-64	bHLH family protein