PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.2348

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 422aa MW: 45870.2 Da PI: 6.3302

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.2348	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.6e-15	45	89	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++++a k++G W+ I +++g ++t+ q++s+ qk+ evm.model.AsparagusV1_07.2348 45 RERWTDEEHGKFLEALKLYGRA-WRQIEEHIG-TKTAVQIRSHAQKF 89 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MPSNPLCLDN KTTSENWLQT KKTMASSVLE HAIKVRKPYT ITKQRERWTD EEHGKFLEAL 60 KLYGRAWRQI EEHIGTKTAV QIRSHAQKFF TKVVLESNGD NSDESKTLSI PPPRPKRKPL 120 HPYPRKLGNS PSIPAVEKGA WSLIPKLSVV SESKLLSNEQ ENRSPTSVLS VVGSDTFHSS 180 SASGIMSSNA SPASSEQVET SLGEQDDVGH STTTSVEDDD KSLKTTDMEL DMGTDDSIPD 240 NEASPAESPA TSLKLFGKTV IVADTQKPLC STVDDAEQPY EAPTSTNQWN AAPMFYILPS 300 SGVSMSASVS MPYLWGFCGD AASDVAAAKR LKSGERETET SFAGSNTVPR GESSVEDGSG 360 PPNVSLKFRP SETSAFRSLK ATKNKPCQGF VPYRRCVPDK EVENQKTGGE NREGRGLHLC 420 L*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MPSNPLCLDN KTTSENWLQT KKTMASSVLE HAIKVRKPYT ITKQRERWTD EEHGKFLEAL  60
KLYGRAWRQI EEHIGTKTAV QIRSHAQKFF TKVVLESNGD NSDESKTLSI PPPRPKRKPL  120
HPYPRKLGNS PSIPAVEKGA WSLIPKLSVV SESKLLSNEQ ENRSPTSVLS VVGSDTFHSS  180
SASGIMSSNA SPASSEQVET SLGEQDDVGH STTTSVEDDD KSLKTTDMEL DMGTDDSIPD  240
NEASPAESPA TSLKLFGKTV IVADTQKPLC STVDDAEQPY EAPTSTNQWN AAPMFYILPS  300
SGVSMSASVS MPYLWGFCGD AASDVAAAKR LKSGERETET SFAGSNTVPR GESSVEDGSG  360
PPNVSLKFRP SETSAFRSLK ATKNKPCQGF VPYRRCVPDK EVENQKTGGE NREGRGLHLC  420
L*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	8e-40	MYB_related family protein