PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.2280

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Protein Properties

Length: 382aa MW: 42293.4 Da PI: 5.4389

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.2280	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.8	2.9e-16	213	299	3	85
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 k+l++sdv++ gr+vlpkk ae++ + ++ ++ l + d+ +W++k+++ ++ks++y+++ + eFvka+gL++g evm.model.AsparagusV1_07.2280 213 KELSNSDVGTVGRIVLPKKEAEANlpPLTERDGIILEVDDLALpVTWKFKYRFwpNNKSRMYIME-STGEFVKAHGLQAG 291 899********************9888889999999996667***99766666666666.9********* PP -EEEEEE- CS B3 78 DfvvFkld 85 D ++++++ evm.model.AsparagusV1_07.2280 292 DYFIIYRS 299 **9943 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MEGGEGGKSS RSGGFCFGGE NSMPILSRGG SNSLRCRELE FDQAPVGLNG LGFHGDNAQL 60 GSGFLGNGLP YENNSVPNSV SNMKTLVDFP NINPPNSYSF LSQVESFPPI MNNNFYSASA 120 LPCNSMALPA TSQPTLMPSS CLSANFKENE HSDIGESKNH EGHICNMRSR SIQSSENSSL 180 GIRQTLRQHT IHPPIEEFDD DLEDTALKLI MRKELSNSDV GTVGRIVLPK KEAEANLPPL 240 TERDGIILEV DDLALPVTWK FKYRFWPNNK SRMYIMESTG EFVKAHGLQA GDYFIIYRSL 300 VSDNYVVRGK KAVRPPKHAE VINCHQISES NMKADCLNQM LIDEHENGDS RQLWLEQEKT 360 RGELAANPPQ RPEFPPLGWN F*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MEGGEGGKSS RSGGFCFGGE NSMPILSRGG SNSLRCRELE FDQAPVGLNG LGFHGDNAQL  60
GSGFLGNGLP YENNSVPNSV SNMKTLVDFP NINPPNSYSF LSQVESFPPI MNNNFYSASA  120
LPCNSMALPA TSQPTLMPSS CLSANFKENE HSDIGESKNH EGHICNMRSR SIQSSENSSL  180
GIRQTLRQHT IHPPIEEFDD DLEDTALKLI MRKELSNSDV GTVGRIVLPK KEAEANLPPL  240
TERDGIILEV DDLALPVTWK FKYRFWPNNK SRMYIMESTG EFVKAHGLQA GDYFIIYRSL  300
VSDNYVVRGK KAVRPPKHAE VINCHQISES NMKADCLNQM LIDEHENGDS RQLWLEQEKT  360
RGELAANPPQ RPEFPPLGWN F*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26790.1	2e-36	B3 family protein