PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.2197
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 400aa    MW: 45147.4 Da    PI: 8.62
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.2197genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-183480148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd ll + vk++ g++Wk+Ia+ +  +Rt+ qc +rwqk+l
  evm.model.AsparagusV1_07.2197 34 KGNWTPEEDALLTESVKKHNGKNWKSIAKLFK-NRTDVQCLHRWQKVL 80
                                   79*****************************9.************986 PP
2Myb_DNA-binding57.53e-1886132148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    +g+WT+eEd+l++  vk +G+++W+ +a+ ++ gR +kqc++rw+++l
  evm.model.AsparagusV1_07.2197  86 KGAWTKEEDDLILSQVKVHGTKNWSVVAKSLP-GRIGKQCRERWHNHL 132
                                    79******************************.*************97 PP
3Myb_DNA-binding51.32.7e-16138180145
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                    +++WT++E++ l+ a +++G++ W+ Ia++++ gR+++++k++w+
  evm.model.AsparagusV1_07.2197 138 KDAWTKDEEKVLIWAQNMYGNR-WAEIAKHIP-GRSDNSIKNHWN 180
                                    689*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MMGGDLKRDS DGDYERRAST VAQKTCGPMR RSTKGNWTPE EDALLTESVK KHNGKNWKSI  60
AKLFKNRTDV QCLHRWQKVL DPELVKGAWT KEEDDLILSQ VKVHGTKNWS VVAKSLPGRI  120
GKQCRERWHN HLNPAIKKDA WTKDEEKVLI WAQNMYGNRW AEIAKHIPGR SDNSIKNHWN  180
CSLKKRCDLT NVTISHNLKN YLSEPQPQKS DRRPLEPKQA SDCCSPNLEV SSLSQASSII  240
ERQEQNGSPS EVLCTHQNDE NTIFSTPPSV SSKNFSTPEA NYQQAHTPVY NSTTSDLSVS  300
ISSSPISFLS SYVRSAAKDY ELPSILSRPS QHKRAVDEND SVGVNHPTPK RAKHDIWSTE  360
DFSNLPRDYL RLGLPGSTES IRRLEPEFDS VCDSASQQL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.23e-80MYB family protein